PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026643.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 618aa    MW: 65303.7 Da    PI: 10.0499
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026643.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36.1e-1698145555
         AP2   5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 GVr ++ +g+++AeIrd    + k +r++lg+f+t+e Aa a+++a+ + +g
  Do026643.1  98 GVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFSARG 145
                 9*****.**********32..2.24***********************9998 PP
2AP246.87.2e-15451500355
         AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + GVr ++ +g+++AeIrd    + k +r++lg+f+t+e Aa  +++a+ + +g
  Do026643.1 451 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALTYDQAAFAARG 500
                 57******.**********32..2.24**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.35195153IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2096154IPR016177DNA-binding domain
PfamPF008471.2E-1197145IPR001471AP2/ERF domain
SMARTSM003802.5E-2998159IPR001471AP2/ERF domain
CDDcd000184.93E-1298130No hitNo description
Gene3DG3DSA:3.30.730.109.4E-2798153IPR001471AP2/ERF domain
SMARTSM003803.2E-29450514IPR001471AP2/ERF domain
PROSITE profilePS5103221.311450508IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-19451510IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-26451509IPR001471AP2/ERF domain
PfamPF008477.1E-11451500IPR001471AP2/ERF domain
CDDcd000181.29E-17451509No hitNo description
PRINTSPR003673.5E-7451462IPR001471AP2/ERF domain
PRINTSPR003673.5E-7474490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MEQGNHTSSA SDSYYSGAAP AAPPLQFDAA DGTHDMLLQQ LDAFLLGTDA AAAEDSSDWL  60
SSSPASSSSE AAGVVPLSPS TQEELHRRPP PGDKALIGVR KRPWGKFAAE IRDSTRKGAR  120
VWLGTFDTPE AAALAYDQAA FSARGAAAVL NFPVDRVRES LGALALAGTG GGGSPVLALK  180
RRHSKRTRRR KLPAAAATSS KNLKPQRSPS RQSSDVSSTA MSVPVPEQQV AARWQCHCGV  240
VELEDLGTDY LDELLRVSSE LECSLIGISS SRGWVSSMRG AGEGSGGGGR RGPGRGRRRR  300
CPGGAEEARR RGGAAARGRA ARVQRRGGPA QRRGRRRGAA WGRAAREQRG GDPAWRRGQR  360
GRDAAGPGAA SPAFHTTDSD MLLQLEAFLL GDDMDADTAE VCSGWSSPSS SSVTASSEAG  420
AAMGSAATIG DYQDGLPENS DASRGEKRAA FIGVRKRPWG KFAAEIRDST RKGARVWLGT  480
FDTPEAAALT YDQAAFAARG AAAVLNFPVE RVRESLGALA LAGAGGGSPV LALKRRHSKR  540
TRRRKLSPAI KDSKNNPNQQ LRQERQCSDV SGVAVAVPQQ QETAPNQCPF DCGIVELDDL  600
GEDYLDELLR LSSELGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2298510974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276831e-101KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979115.11e-73ethylene-responsive transcription factor ERF094
TrEMBLA0A3L6Q2G45e-79A0A3L6Q2G4_PANMI; Uncharacterized protein
STRINGPavir.Ha01200.1.p4e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.15e-30ethylene-responsive element binding factor 15