PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026686.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 409aa    MW: 43069.8 Da    PI: 6.4623
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026686.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.12.3e-1376157286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +++   +       ++++fd+l+
  Do026686.1  76 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSSDGYSKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFDRLD 157
                 *************************************86677766222667**************99998886.......499999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2274158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDDDDDLSPD ASPSPASSAG ADPVTLPVAD PVTVASAPPG GGAYPVALPI HRTAASLYAT  60
AGGGGGGGGG GREDAWSEGA TSALIDAWGE RFVALGRGSL RHPQWQEVAD AVSSSDGYSK  120
APKSDVQCKN RIDTLKKKYK IERAKPASSW QFFDRLDFLL APTYGNKPGS GGGGGGGGGH  180
NSNNSRSPVP AALRVGFPQR SRTPLMHAAA AAAKRRAPSP EPSVSSESSD GFPPVPALPA  240
VNGKKRRTDE GRANGGSGGD RTQGLRDLAQ AIRRLGEAYE RVEAAKLEQA AEMERRRIDF  300
ARDLESQRGQ FFLNTQMELT QAKNHASPAG ATTVGGSSRR MSMAADAGGS SNHHHSRYQI  360
SHGDRHHHAL RPHYQQYHEN NHAAAAAAAS DGEQSEEEDN EEEEEEESQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026686.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975744.10.0trihelix transcription factor ASIL2
TrEMBLA0A1E5V6A40.0A0A1E5V6A4_9POAL; Trihelix transcription factor ASIL2
STRINGSi010246m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-34sequence-specific DNA binding transcription factors