PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do026803.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YC

Protein Properties

Length: 195aa MW: 21738.4 Da PI: 4.7172

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do026803.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	44.5	3.3e-14	22	111	9	99
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++e++ +f+nh lP+ i + + m+s+++P +l+k ++fi elt+r+ + a + +r+t+ +i +++++ + + fl d+ pr+ Do026803.1 22 RLENTVNFNNHILPVL-FAEISRDTKGSFMMSSDTPPVLTKLLDIFIQELTVRASMCATSHDRSTILEPNIYEVINSHESYVFLNDVLPRH 111 5799********96.567888999999*********************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.92E-10	48	110	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.2E-10	49	110	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDCEQHLCHH CNNKNLMSFG GRLENTVNFN NHILPVLFAE ISRDTKGSFM MSSDTPPVLT 60 KLLDIFIQEL TVRASMCATS HDRSTILEPN IYEVINSHES YVFLNDVLPR HGTNPNRPSM 120 SSNSPQLLQE SLVATSILIE NGPTDPCNKS GEQDFQFSKD NLVPTINAQP NPMELKNEDL 180 NNMSATSSGS IEETK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do026803.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450581.1	5e-39	uncharacterized protein LOC8071541
TrEMBL	A0A1E5V3J5	1e-141	A0A1E5V3J5_9POAL; Uncharacterized protein
STRING	Si026839m	6e-69	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17894	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-10	nuclear factor Y, subunit C2