PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026842.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 514aa    MW: 55996.4 Da    PI: 7.9533
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026842.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18110159255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++G+r+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++  +++l+g
  Do026842.1 110 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTAEAAARAYDIEARRLRG 159
                 69*******.**********72....35*************************98 PP
2AP256.66.5e-18345395155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ +grW+AeIrdp+    + +r++lg++ taeeAa+a+++ +++++g
  Do026842.1 345 KKYRGVRYRR-SGRWAAEIRDPR----QgRRVWLGTYCTAEEAARAYDREARRIRG 395
                 59******99.7*********94....25************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-31109167IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-21110168IPR016177DNA-binding domain
PfamPF008475.0E-11110159IPR001471AP2/ERF domain
CDDcd000182.01E-27110169No hitNo description
PROSITE profilePS5103223.762110167IPR001471AP2/ERF domain
SMARTSM003802.2E-35110173IPR001471AP2/ERF domain
PRINTSPR003674.8E-11111122IPR001471AP2/ERF domain
PRINTSPR003674.8E-11133149IPR001471AP2/ERF domain
CDDcd000182.14E-27345405No hitNo description
PfamPF008473.0E-11346395IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21346404IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-28346403IPR001471AP2/ERF domain
PROSITE profilePS5103222.458346403IPR001471AP2/ERF domain
SMARTSM003801.9E-33346409IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MCGGAILAEL IPSPRRAASA SKPVTAGHLC PAGSTSNSNS NSKKASSGRN MRRNHADIDD  60
FEAAFEEFDD DFDEEVEEDH RFMFSSKSSA FSPAHGGRLA ASQKKRGRRH FRGIRQRPWG  120
KWAAEIRDPH KGTRVWLGTF DTAEAAARAY DIEARRLRGS KAKVNFPAAG ARPRRGNPRT  180
APKPQHPAAV QPALLGVGGE KHQEEMAVKP ELTASFDLGS FFDMTFPPFP AAAPAMESSF  240
TGSTTESESG SPAKKPRYDD SSDGVSGGGG STLELADELA FDPFMLPYSG GYESLDGLFA  300
VEDVNGVNND MNSVGLWSFD EFPPDISGAA VSTTPAPRVA AAGAKKYRGV RYRRSGRWAA  360
EIRDPRQGRR VWLGTYCTAE EAARAYDREA RRIRGKSARL NFPPQHGGPC RQRRRAPVGI  420
DLNLPAVSDD LDGTGGDDTM DVDEDAVQST LARIKDLITQ DPHDERIVSR AAGALPYAAL  480
IAECSRQMEE IAALRRDLET RERQLVRLVS HVLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20109403163ATERF1
3gcc_A1e-20109403163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108QKKRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393003e-78BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBankEU9702443e-78EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
GenBankKJ7269383e-78KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791485.11e-144ethylene-responsive transcription factor 1-like
RefseqXP_025791486.11e-144ethylene-responsive transcription factor 1-like
TrEMBLA0A1E5URJ30.0A0A1E5URJ3_9POAL; Uncharacterized protein
STRINGPavir.Ib00526.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-15related to AP2 6