PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026872.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 330aa    MW: 33932.5 Da    PI: 6.3546
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026872.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.48.3e-25119179259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg+ WrKYGqKe+++s++prsYYrCt++   gC++k++v+ ++ dp+  ++tY geH+++
  Do026872.1 119 EDGHVWRKYGQKEIQNSKHPRSYYRCTHKsdqGCSAKRQVQICEADPSKYVVTYYGEHTCR 179
                 8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-27109181IPR003657WRKY domain
PROSITE profilePS5081122.63113181IPR003657WRKY domain
SuperFamilySSF1182905.62E-25116181IPR003657WRKY domain
SMARTSM007743.2E-35118180IPR003657WRKY domain
PfamPF031061.7E-24119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASSGGDVSA ARAAAAVNEL VEARDGAATL RAFLLQLDDQ RATLALRMID GVLNRLSSAM  60
LALDVSATAA GGQQSPAGGS GSGGARPQQS VSSSGNMKKR SFSRRSQRAS DKKITATLED  120
GHVWRKYGQK EIQNSKHPRS YYRCTHKSDQ GCSAKRQVQI CEADPSKYVV TYYGEHTCRD  180
PATIPLVVPA AGAAHDDRTD NLISFAPNCF TANAAAITAG ASSSRLLNIE ASATQLSSTS  240
WCPSDDVFSS STGSFMQVDE LIGAVVGSAG VTSTATVGSA LDRTRLGGVA GGGGGGTASF  300
PPSPNGDLEF VVGSLGSIGG DDDDLFGMDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-30114179469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984468.11e-148probable WRKY transcription factor 70 isoform X2
TrEMBLA0A1E5ULS10.0A0A1E5ULS1_9POAL; Uncharacterized protein
STRINGPavir.Ib01568.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-25WRKY DNA-binding protein 70