PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026995.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 217aa    MW: 22958.3 Da    PI: 4.6984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026995.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.2e-05136160529
                 HHHHHHHHHHHHHHHHHHHHCTSCC CS
         HLH   5 hnerErrRRdriNsafeeLrellPk 29 
                 h +rEr+RR+++ ++++ L  ++  
  Do026995.1 136 HMMRERQRREKLSQSYADLYAMIAA 160
                 889****************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.51E-5126162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MQMDSYFYTG CFHDEAPFNP HGAVPPSPEL PFGLIASPGE PEPPFAAPPP QALGPTAFQD  60
YCGAGPEMMP QSSVGAGEPH HGSGAGANVH MRVVGALGTM GGDPEQDQAM GEVEEEPRQR  120
QQPGGGAVES SRGFRHMMRE RQRREKLSQS YADLYAMIAA GEVEKAVEEA LMQEVERKQQ  180
HPEAGSGGPG FPGTSPSSSS GRGWGPQASS SHVQNVF
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026995.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9436474e-32EU943647.1 Zea mays clone 1671614 mRNA sequence.
GenBankEU9556234e-32EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
GenBankKJ7267934e-32KJ726793.1 Zea mays clone pUT2279 bHLH transcription factor (bHLH103) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794972.11e-67transcription factor BHLH148-like
SwissprotQ75KV92e-25BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A2S3II723e-66A0A2S3II72_9POAL; Uncharacterized protein
STRINGPavir.Ia00623.1.p2e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]