PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027099.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 81aa MW: 8910.99 Da PI: 4.1469

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027099.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	29	2.9e-09	1	32	61	92
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlka 92 +++eA++r++dPvyG++gvi +lqq+++ ++ Do027099.1 1 MMMEARWRMQDPVYGCTGVIDRLQQEIRAVRP 32 589************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.0E-6	1	31	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MMMEARWRMQ DPVYGCTGVI DRLQQEIRAV RPPRAAAPAS SETRTGCAVV VHAGAHGITV 60 NEEEDEEAPL MDPDEFLDLD G

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027099.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444738.2	3e-12	LOB domain-containing protein 24
TrEMBL	A0A1E5VF28	1e-52	A0A1E5VF28_9POAL; Uncharacterized protein (Fragment)
STRING	Pavir.Cb01140.1.p	2e-18	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62