PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027187.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 193aa    MW: 21114.8 Da    PI: 4.5365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027187.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-181968255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f +ae+Aa a++ a+++l+g
  Do027187.1 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESAEMAAVAHDVAALRLRG 68
                69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.8E-371982IPR001471AP2/ERF domain
CDDcd000182.12E-311976No hitNo description
PROSITE profilePS5103223.6171976IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-221976IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-311976IPR001471AP2/ERF domain
PfamPF008471.4E-112068IPR001471AP2/ERF domain
PRINTSPR003676.5E-102031IPR001471AP2/ERF domain
PRINTSPR003676.5E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEVVLDNVNG VAAGDVAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SAEMAAVAHD  60
VAALRLRGRE ARLNFPGIVH HFRRPATAEP DDVRAAALEA AAQVRFRPDL VMQPGGDSDD  120
SCGGSAGSPD LMLGDDVAWD VLLGTDELAP ESPKMWAELA EAMLMAPPVW EGSMVDNDEW  180
AQGNLWDLPV WHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-171976260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-171976563ATERF1
3gcc_A3e-171976563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027187.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9726815e-93EU972681.1 Zea mays clone 385859 CBF-like protein mRNA, complete cds.
GenBankKJ7275115e-93KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828349.11e-111ethylene-responsive transcription factor ERF022
TrEMBLA0A1E5VJX21e-136A0A1E5VJX2_9POAL; Uncharacterized protein
STRINGPavir.J22217.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-19ERF family protein