PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027381.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HB-other
Protein Properties Length: 222aa    MW: 25084.8 Da    PI: 8.9085
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027381.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.61.5e-061979654
                S--HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHH CS
    Homeobox  6 tftkeqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRak 54
                +f++ +++e+ee  +   +r+p++  ++eLA+k            ++ +qV +WF  rR+k
  Do027381.1 19 RFKPAEVKEMEERLKprATRKPDRVLIKELAEKFsysldragmiPVNPKQVLNWFRYRRYK 79
                6999999*****999645***********************99999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-5779IPR009057Homeodomain-like
PROSITE profilePS500719.3131183IPR001356Homeobox domain
SuperFamilySSF466891.18E-71879IPR009057Homeodomain-like
PfamPF167191.2E-21131215IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEQGMGPQSS STKKARSFRF KPAEVKEMEE RLKPRATRKP DRVLIKELAE KFSYSLDRAG  60
MIPVNPKQVL NWFRYRRYKR DTKLARGAPA IAPPPENAGS SSTDQQQQRQ LTAFGIGPAI  120
GKMQAPPLQE VMVHYSGFGA EEAEWINART CLRQRSLPCK ATECVSAAPG DIVLCCKLSE  180
KSSLYFDAEV KDIERKSHDS IACDCMFHVC YEHDKSEVLL HF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A3e-1813021734121SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B3e-1813021734121SAWADEE HOMEODOMAIN HOMOLOG 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659541.11e-53protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X2
TrEMBLA0A1E5UWV21e-165A0A1E5UWV2_9POAL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.34e-36sequence-specific DNA binding transcription factors;sequence-specific DNA binding