PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027400.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

M-type_MADS

Protein Properties

Length: 152aa MW: 17429.2 Da PI: 9.2095

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027400.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.6	1.8e-24	11	60	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ rqv fskRr+g+lKKA+EL LCdaeva+++fs+ gklyey+s Do027400.1 11 RIEDRVSRQVRFSKRRAGLLKKAFELXLLCDAEVALLVFSPAGKLYEYAS 60 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-28	2	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.726	2	62	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.06E-35	3	73	No hit	No description
PRINTS	PR00404	3.0E-26	4	24	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-27	4	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-23	11	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-26	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-26	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MPRRGVVQLR RIEDRVSRQV RFSKRRAGLL KKAFELXLLC DAEVALLVFS PAGKLYEYAS 60 XSIEDTFDRY LQFGRAGANA NGDQNRNNDE VSSDLQSRLQ EIATWSLQNN AEESDANELV 120 QLENLLRNAL RDTRFKKVEK LNRTVSSFHL CA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	8e-18	4	98	3	91	MEF2 CHIMERA
6byy_B	8e-18	4	98	3	91	MEF2 CHIMERA
6byy_C	8e-18	4	98	3	91	MEF2 CHIMERA
6byy_D	8e-18	4	98	3	91	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184819	8e-79	KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817550.1	4e-69	MADS-box transcription factor 51-like isoform X1
Refseq	XP_025817551.1	4e-69	MADS-box transcription factor 51-like isoform X1
Swissprot	Q9XJ61	3e-59	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A1E5UKE5	1e-104	A0A1E5UKE5_9POAL; MADS-box transcription factor 50
STRING	Sb03g044170.1	7e-68	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	9e-31	AGAMOUS-like 20

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]