PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027454.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YB

Protein Properties

Length: 237aa MW: 26234.8 Da PI: 9.6982

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027454.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	68.2	1.5e-21	90	134	53	97
NF-YB 53 kcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 + qrekrktingddllwa++tlGfedyveplk yl+k+re+ege+ Do027454.1 90 RRQREKRKTINGDDLLWAMTTLGFEDYVEPLKCYLHKFREIEGER 134 569***************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00615	2.9E-9	91	109	No hit	No description
Gene3D	G3DSA:1.10.20.10	4.1E-18	92	156	IPR009072	Histone-fold
SuperFamily	SSF47113	6.58E-14	92	148	IPR009072	Histone-fold
PRINTS	PR00615	2.9E-9	110	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
LQPRTHASLN AAWRVQRVAR YSGTYVLLQG AAYGRYLALS PEQVPPDHRA VQSDYDEPGM 60 VAIMWKAFST GGQDRRHPSA PLLRPPPPRR RQREKRKTIN GDDLLWAMTT LGFEDYVEPL 120 KCYLHKFREI EGERVAASSG ASGSAAQQQA DVARSAANDD RYARYGTPGA GGMMMMGQPM 180 YGSPQQQHEP SRAVVEAIGG RRPILICPRG VHLGRVCTVT ALHPSSTEFF FPKSEPC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027454.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5V951	1e-175	A0A1E5V951_9POAL; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47640.1	1e-19	nuclear factor Y, subunit B2