PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027458.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 297aa    MW: 32039.5 Da    PI: 8.4799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027458.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF421.2e-13339642
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                k+ rq  f kRr++++ KA+ELS+LC + +av++++ 
  Do027458.1  3 KIARQAAFRKRRATLIRKAKELSTLCKVPAAVVVYGR 39
                688********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-4149IPR002100Transcription factor, MADS-box
CDDcd002661.52E-16174No hitNo description
PROSITE profilePS5006612.166138IPR002100Transcription factor, MADS-box
PfamPF003191.8E-12339IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-15382IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKKIARQAAF RKRRATLIRK AKELSTLCKV PAAVVVYGRG ETEPKVWPGV QEVTEVLQRY  60
RDLPAALKEA RKLDNEGFMR RRTQKMKRKL DNCKASARAL DVNLIINDIS LGRPRKFDDL  120
SPELAAAVVS TLGTLRAVTA DRVKFLSSEG AQAALPPPLE ESLALMALQE PPMVPPLAMA  180
APMVANAPLV QPAPTQSALV VAPPPPHEEP PMVPPLAMAL TVADAPLLLP APEPEPQAIA  240
AGVGVDEPLN LDFEPRSGSF LLEMADAIVD DGSGRQATAE DVVRLLREHG LGCFKPM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304121.14e-84MADS-box transcription factor 56
TrEMBLA0A1E5UL180.0A0A1E5UL18_9POAL; Uncharacterized protein
STRINGSi024783m1e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2104367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-16AGAMOUS-like 87