PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027698.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 190aa    MW: 20551.3 Da    PI: 9.591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027698.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-0993139555
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 + + Er RR+r+++ f++L +l+ + +     kK + ++ + ++++YI+ L+
  Do027698.1  93 NTITERERRRRMRDMFSTLHTLMSHvP-----KKADNVTLVGETIDYIRALE 139
                 5789*********************77.....99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.13888138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-1090151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-793139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-594144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1095152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MPPTTITLLG PAENENGESR IGSPVGMDAS KGKDVVLNDI QGGEHVSASG GKGNAHGSKG  60
KHSTVAIAAE NAAGDGFTKV RSLAPDDGNL KVNTITERER RRRMRDMFST LHTLMSHVPK  120
KADNVTLVGE TIDYIRALEK TKIQLEKRKQ EQELARQATT EARTPYSMLR TAQGMAAFCG  180
WGRISSMCDI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952702.13e-78transcription factor bHLH95
TrEMBLA0A1E5UJI71e-139A0A1E5UJI7_9POAL; Uncharacterized protein
STRINGSi017798m1e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.16e-08bHLH family protein