PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027717.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 873aa    MW: 98304.1 Da    PI: 8.2184
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027717.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.51.8e-23127223186
    trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                 +Wt+++v++Li+a ++++e+ ++++          +kk++W+++sk+m erg+ +sp+qC++k+++lnkryk++++  +++ t++ + +  ++d ++
  Do027717.1 127 KWTDSMVKLLITAASYTGEDPGADSgggrrncammQKKGKWKAISKVMGERGCLVSPQQCEDKFNDLNKRYKRLTDLLGRGtTCRIVANPELLDGMT 223
                 7*********************9877778888999********************************************996688888887777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-18125249No hitNo description
SuperFamilySSF813831.28E-6479533IPR001810F-box domain
Gene3DG3DSA:1.20.1280.504.1E-7485533No hitNo description
PfamPF006461.1E-10489542IPR001810F-box domain
SuperFamilySSF545181.78E-98539723IPR025659Tubby C-terminal-like domain
Gene3DG3DSA:3.20.90.106.1E-93549719IPR000007Tubby, C-terminal
PfamPF011674.2E-94554867IPR000007Tubby, C-terminal
PRINTSPR015732.3E-73606622IPR000007Tubby, C-terminal
PRINTSPR015732.3E-73622646IPR000007Tubby, C-terminal
PRINTSPR015732.3E-73669696IPR000007Tubby, C-terminal
Gene3DG3DSA:3.20.90.106.1E-93764867IPR000007Tubby, C-terminal
SuperFamilySSF545181.78E-98768873IPR025659Tubby C-terminal-like domain
PRINTSPR015732.3E-73774791IPR000007Tubby, C-terminal
PRINTSPR015732.3E-73792808IPR000007Tubby, C-terminal
PROSITE patternPS012000792805IPR018066Tubby, C-terminal, conserved site
PRINTSPR015732.3E-73830849IPR000007Tubby, C-terminal
PRINTSPR015732.3E-73851873IPR000007Tubby, C-terminal
PROSITE patternPS012010858873IPR018066Tubby, C-terminal, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
LLVYGISLHD PLGKMERNNL PSGSLLQGTP YGSLDLHHNH MQIHPPNSGN QGFNHSQMPS  60
NFPIHLNQVT DSDQQSEFQF GEHGKANHHH QHTMNSMSDD EEHGVNEDAT DSQTGKGKKG  120
SAWHRMKWTD SMVKLLITAA SYTGEDPGAD SGGGRRNCAM MQKKGKWKAI SKVMGERGCL  180
VSPQQCEDKF NDLNKRYKRL TDLLGRGTTC RIVANPELLD GMTNLSDKTK DDARKILSSK  240
HLFYEEMCSY HNNNRCSLPE DPALQRSLQL ALKCKDEHDA RRVSGDADDD DQSADTDYDE  300
ENEDEHPMVH VNKGTLPMHK RMRYMADRED AGFGNSSSSH DFSRRSDPHS IQVDINKVFP  360
DGTNLALVQT DLATQSAEIE KQRMEIEVEA LELAKQRHKW ERFSKKKDRE LEKMRFLMAF  420
DVRVEYCKKV GKDSVDDAFT WSIVRDVRDG FGSLSRRGFE VKLLGHRRGK SHGAVHELHD  480
PAPVIQSSCW ANLPPELLRD VIERLEASEA TWPNRKNVVS CAAVCRTWRE MCKEIVKNPE  540
FSGKITFPVS MKQPGPRDAT IQCFIKRDKS TQTYYLYLCL STAVLVESGK FLLSAKRTSR  600
PTCTEYTIFM NSENISRSSK MYIGKLRSNL LGTKFAIYDT QPPCNAAQPG KTSRRFYPRK  660
VSPKVSSSTY NIAQVSYELN VLGTRGPRRM NCVMHSIPAS SLEAGGTVPC QPDSVLTRSL  720
DESFGSISFS KSSVVDHSMR FSSTRFSEVS MSSHRIGDMA LGDNDECKER PLILRNKAPR  780
WHEQLQCWCL NFRGRVTVAS VKNFQLVAAT QPASGTLIPS QAAPAPPPEH EKVILQFGKV  840
AKDMFTMDYR YPLSAFQAFA ICLSSFDTKL ACE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2fim_A1e-4655387331276Tubby related protein 1
2fim_B1e-4655387331276Tubby related protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9568840.0EU956884.1 Zea mays clone 1576586 tubby-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5W3R60.0A0A1E5W3R6_9POAL; Tubby-like F-box protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.19e-91sequence-specific DNA binding transcription factors