PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do028032.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Nin-like

Protein Properties

Length: 240aa MW: 27814.8 Da PI: 6.3703

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do028032.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3e-28	111	161	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +++e +s+yF++pi +AA+eL+v+lT+LK++CRq+GI+RWPhRk+ksl Do028032.1 111 ETALTFELVSQYFYMPIMQAARELNVGLTLLKKRCRQLGIPRWPHRKMKSL 161 6789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.963	99	181	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-22	114	161	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
LWPYWTGAWP DSYLLEEEAF LSSLSFPSLH FQPSCSTAIA PSNILQDELD AIFKDDVLKH 60 WDEMEQQADS KIDDGHNRLP LLCYGEEKEV SDNSDARVVV RAAEQRARPE ETALTFELVS 120 QYFYMPIMQA ARELNVGLTL LKKRCRQLGI PRWPHRKMKS LQSLINNVQV LQEAGKAAGE 180 EQLRAVVEML QQEKQLLEQR PYVQLEEKTK RLRQACFKAN YKKRRLLALE AGEAPRIHNY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do028032.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003509	2e-46	AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01.
GenBank	AP003569	2e-46	AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBank	AP014962	2e-46	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966836.1	1e-142	protein RKD2
TrEMBL	A0A1E5W6J3	1e-177	A0A1E5W6J3_9POAL; Protein RKD1 (Fragment)
STRING	Pavir.Da01160.1.p	1e-133	(Panicum virgatum)
STRING	Si008273m	1e-141	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	6e-39	RWP-RK domain-containing protein