PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do028068.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YB

Protein Properties

Length: 173aa MW: 19148.4 Da PI: 4.6556

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do028068.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	53.4	6.5e-17	39	137	6	97
NF-YB 6 rflPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 ++lP a v r++k l a+ + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ +++k Do028068.1 39 EELPKAIVRRLVKDKLAhiaggegAEVIVNKDAMTAFAESARIFIHYLSATANDMCKETKRQTINADDVLKALDEMEFSEFVEPLRTALQEFRNKNADK 137 679999999999998862222211344589***************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-33	37	170	IPR009072	Histone-fold
Pfam	PF00808	5.0E-10	40	111	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	8.38E-28	41	170	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MPPRKATKEA DPQPAAAAQE EPAPAPEAPA AALTEAEVEE LPKAIVRRLV KDKLAHIAGG 60 EGAEVIVNKD AMTAFAESAR IFIHYLSATA NDMCKETKRQ TINADDVLKA LDEMEFSEFV 120 EPLRTALQEF RNKNADKRSE ASKKQKEKRR KLNEEPLPQK ENDPADDANE NDD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do028068.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060559	1e-168	BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBank	EU962697	1e-168	EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBank	EU964046	1e-168	EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBank	KJ728301	1e-168	KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310236.1	2e-89	DNA polymerase epsilon subunit 3
TrEMBL	A0A1E5UII8	1e-119	A0A1E5UII8_9POAL; Uncharacterized protein
STRING	Pavir.Bb01701.1.p	4e-84	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	8e-33	nuclear factor Y, subunit B11