PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028069.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 139aa    MW: 15185.8 Da    PI: 7.4593
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028069.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.37.3e-24262259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                +Dg+ WrKYGqKe+++s++prs YrCt++   gC++k++v+ ++ dp+  +itY g+H+++
  Do028069.1  2 EDGHVWRKYGQKEIQNSKHPRSNYRCTHKsdqGCSAKRQVQICEADPSKYVITYYGKHTCR 62
                8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.9E-31163IPR003657WRKY domain
PROSITE profilePS5081121.873164IPR003657WRKY domain
SuperFamilySSF1182904.05E-23264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-25264IPR003657WRKY domain
PfamPF031061.3E-23262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
LEDGHVWRKY GQKEIQNSKH PRSNYRCTHK SDQGCSAKRQ VQICEADPSK YVITYYGKHT  60
CRDPATIPLV VPATGEAHDD RTDNLISFTP NSFTANAAAI TAGASSSRLL NLEASATQLS  120
STSWCPSDDV FSSLAGSFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-27162869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028069.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984467.12e-65probable WRKY transcription factor 70 isoform X1
RefseqXP_004984468.12e-65probable WRKY transcription factor 70 isoform X2
TrEMBLA0A1E5VE571e-100A0A1E5VE57_9POAL; Uncharacterized protein (Fragment)
STRINGSi036565m7e-65(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-23WRKY DNA-binding protein 70