PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do028089.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 86aa MW: 9801.45 Da PI: 11.9835

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do028089.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.5e-33	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR Do028089.1 23 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 76 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.653	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-32	19	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-25	23	76	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-11	24	75	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MVRTVVGRER SGGVRQYNRS KVPRLRWTPD LHHCFVHAIH KLGGQDKATP KRVLQLMGVG 60 GLTISHVKSH LQMYRNMRND IGMQGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do028089.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068910	1e-104	BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
GenBank	HQ858702	1e-104	HQ858702.1 Zea mays clone UT1158 G2-like transcription factor mRNA, partial cds.
GenBank	KJ726813	1e-104	KJ726813.1 Zea mays clone pUT3230 G2-like transcription factor (GLK48) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698081.1	9e-55	uncharacterized protein LOC101766248
Refseq	XP_025792174.1	1e-54	uncharacterized protein LOC112873442
Swissprot	Q700D9	3e-27	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A1E5UIK9	1e-56	A0A1E5UIK9_9POAL; Putative Myb family transcription factor
TrEMBL	A0A2T8I6K3	2e-53	A0A2T8I6K3_9POAL; Uncharacterized protein
TrEMBL	K4AB70	2e-53	K4AB70_SETIT; Uncharacterized protein
STRING	Si036127m	3e-54	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7610	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-31	G2-like family protein