PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028106.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26720.6 Da    PI: 9.1849
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028106.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.2e-141151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i n+s r  t+ kR + ++KK +EL +LC+a+++v+++++ 
  Do028106.1 11 ITNSSTRRATYKKRCKVLMKKTSELVTLCGAKACVVVYGEG 51
                89************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.535150IPR002100Transcription factor, MADS-box
CDDcd002666.64E-22283No hitNo description
PRINTSPR004049.7E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-19394IPR002100Transcription factor, MADS-box
PfamPF003197.4E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MARKRVNLQW ITNSSTRRAT YKKRCKVLMK KTSELVTLCG AKACVVVYGE GETQPEVWPS  60
VSEAKRVVKK FKDMPEVGKF KKMQSQDDFL HGRISKLHDQ VCKLDRENRE IETRDLLYES  120
MDGRRPGLEH TTIEELTSLS QMVETKMAKV KERLQQLAVG QGSLPNQPAL FSSQSQASYA  180
YPEVQTLAGL VELQPLQQGR PTDLVPNGGE LDAVIYGAFV GSSSGCISRS SYGCDKTQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472KRVVKKFKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028106.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971693.14e-97agamous-like MADS-box protein AGL80
TrEMBLA0A1E5VN011e-177A0A1E5VN01_9POAL; Agamous-like MADS-box protein AGL80
STRINGPavir.Eb00487.1.p9e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-32AGAMOUS-like 80