PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028107.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21455 Da    PI: 10.1487
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028107.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.8e-122160342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n++ r+ t+ +R + + KK + L +LC+++++v++f++
  Do028107.1 21 IVNNTARHATYKRRYKSLTKKTSDLATLCGIKACVVVFGE 60
                7799**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-111170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.7221160IPR002100Transcription factor, MADS-box
CDDcd002662.65E-181285No hitNo description
SuperFamilySSF554551.29E-161283IPR002100Transcription factor, MADS-box
PfamPF003193.6E-122161IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
LCFLRKHARP IARKKVHLQW IVNNTARHAT YKRRYKSLTK KTSDLATLCG IKACVVVFGE  60
GETQPVVWPS KLEAKRVLKK SKAMPDKFKQ MQNQEDFLHS RISMLQDQVC KLNHYNRELE  120
TADLLHESIY GQCAVLDTAT MEALNNLRWM VYTKTMEAKE RLRELVGEGS LPKLQTSPAS  180
PPQPSCT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028107.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971693.17e-58agamous-like MADS-box protein AGL80
TrEMBLA0A1E5VMY91e-138A0A1E5VMY9_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Eb00487.1.p2e-59(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-24AGAMOUS-like 80