PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do028177.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 186aa MW: 19725.7 Da PI: 11.6902

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do028177.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	70.1	7e-22	2	106	22	98
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesssssasnsssg........... 88 vRls+++a++f+dLqd LGfd++sk+ieWL+++a ai +l+ + + + s s g Do028177.1 2 VRLSVPTAIQFYDLQDCLGFDQPSKAIEWLINAASDAIEKLPALdlsafaalpgpgeadagkvkqQ----------QGSRS------Gggstsetskgs 84 8*******************************************7766666655543333332210..........11111......111112223333 PP TCP 89 ............kaaksaaksk 98 + ++ a ++ Do028177.1 85 elsfsrsgarggRGRRRARQGG 106 3334443344442222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	22.82	1	42	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.7E-19	2	105	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
CVRLSVPTAI QFYDLQDCLG FDQPSKAIEW LINAASDAIE KLPALDLSAF AALPGPGEAD 60 AGKVKQQQGS RSGGGSTSET SKGSELSFSR SGARGGRGRR RARQGGHRHQ HLGAGRVLHR 120 AAHRRRGAAR GGATEEAARV AREGGSEGGT RRRRWLPEAR WGREGCAGGG REGGRRGHFG 180 LYAVLX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-15	2	43	14	55	Putative transcription factor PCF6
5zkt_B	5e-15	2	43	14	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do028177.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q93V43	2e-21	TCP2_ARATH; Transcription factor TCP2
TrEMBL	A0A3L6TG38	1e-42	A0A3L6TG38_PANMI; Uncharacterized protein
STRING	Pavir.Ia00505.1.p	9e-43	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3094	32	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-18	TCP family protein

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]