PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028405.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 173aa    MW: 17719.5 Da    PI: 5.2142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028405.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-14655255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y GVr+++ +gr++AeIrdp     r + ++ g+f++ae Aa+a++aa ++++g
  Do028405.1  6 KYCGVRRRP-SGRYAAEIRDP---A-RkTPIWFGTFDSAEAAARAYDAATRSIRG 55
                688******.7*********8...2.35*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-27669IPR001471AP2/ERF domain
CDDcd000182.68E-13665No hitNo description
Gene3DG3DSA:3.30.730.107.8E-27665IPR001471AP2/ERF domain
PfamPF008479.0E-9655IPR001471AP2/ERF domain
PROSITE profilePS5103220.06663IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-19664IPR016177DNA-binding domain
PRINTSPR003677.2E-6718IPR001471AP2/ERF domain
PRINTSPR003677.2E-62945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
GDAEVKYCGV RRRPSGRYAA EIRDPARKTP IWFGTFDSAE AAARAYDAAT RSIRGAAART  60
NFPSSASPTV AVAPPVVPPT PHHTVAAPAA AATSSHNSVV ESWSGEVGGG AAAITAAGAL  120
RGAAPAATEE DCRSYCSSSS SVLCEDGASF GLNVADPEAA DEMDWRCDTL LHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-176721481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028405.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9660019e-70EU966001.1 Zea mays clone 290693 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801489.12e-53ethylene-responsive transcription factor 3-like
TrEMBLA0A1E5UQD71e-119A0A1E5UQD7_9POAL; Uncharacterized protein (Fragment)
STRINGGRMZM2G322672_P011e-44(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.13e-16ERF family protein