PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028486.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 374aa    MW: 38512.1 Da    PI: 6.6946
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028486.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.9e-0855100342
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  ++C+ +e+ ++   C+ +   lC+ C   +H        H++vp+
  Do028486.1  55 VWVCEVCERAPAAVTCRADAAALCAACDADIHDAnplarrHERVPV 100
                 689*****************************44788888999986 PP
2CCT712.8e-24289332144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+l+RY+eKrk+R+FeK+irY+sRKa+AesRpRvKGrF+k+a
  Do028486.1 289 REARLMRYREKRKNRRFEKTIRYASRKAYAESRPRVKGRFAKRA 332
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0131257IPR000315B-box-type zinc finger
PROSITE profilePS5011910.86553100IPR000315B-box-type zinc finger
PfamPF006438.0E-654100IPR000315B-box-type zinc finger
SMARTSM003367.9E-958100IPR000315B-box-type zinc finger
PfamPF062035.8E-18289331IPR010402CCT domain
PROSITE profilePS5101716.986289331IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEVALAARYW GVGGRRCGAC GGSPAAVHCR TCPGGGAYLC AGCDAGHARA GHERVWVCEV  60
CERAPAAVTC RADAAALCAA CDADIHDANP LARRHERVPV QPIGAAAPAA ADALLLFGSS  120
AEEKDYAAAA GMLAGGAVDG GAKIDAPKLD FLFADVMDPF LGQDFARFPH ADSVVPSNGS  180
SGGGVDLDFG GAAAAAAKPS YTSYTAASLG HSGSSSEVGL VPDVICGRGG SVTGGVIEFD  240
FAQSKAAYLP YASTPTHSVS SFEAVPERSD GGVMAGRVVA TPAAAAESRE ARLMRYREKR  300
KNRRFEKTIR YASRKAYAES RPRVKGRFAK RADDNDAEAE SATDFISTAA APPQTGAYPY  360
VLDFSAGYGV VPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096304e-49AK109630.1 Oryza sativa Japonica Group cDNA clone:002-138-D02, full insert sequence.
GenBankAP0048384e-49AP004838.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0504A05.
GenBankAP0149584e-49AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-49CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818683.11e-165zinc finger protein CONSTANS-like
TrEMBLA0A1E5VW130.0A0A1E5VW13_9POAL; Uncharacterized protein
STRINGPavir.Aa03360.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.16e-20CONSTANS-like 5