PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028605.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 49aa    MW: 5440.5 Da    PI: 8.7948
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028605.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.82.4e-11140141
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41
                lp GfrF+Ptdeel+ +yL++k+ + +l++  +i+++d+ +
  Do028605.1  1 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDADLAR 40
                799************************999.89*9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-13141IPR003441NAC domain
PROSITE profilePS5100515.113149IPR003441NAC domain
PfamPF023653.9E-7224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
LPIGFRFRPT DEELLLHYLR RKALACPLPA GIIPDADLAR LPSLKTPCA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028605.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699701e-47EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151274.18e-20uncharacterized protein LOC100284907
RefseqXP_002456878.18e-20NAC domain-containing protein 83
RefseqXP_004971124.11e-19NAC domain-containing protein 83-like isoform X1
RefseqXP_004971125.11e-19NAC domain-containing protein 83-like isoform X2
RefseqXP_004971126.11e-19NAC domain-containing protein 83-like isoform X3
TrEMBLA0A1E5V5B78e-26A0A1E5V5B7_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Eb03721.1.p3e-19(Panicum virgatum)
STRINGSb03g044440.13e-19(Sorghum bicolor)
STRINGGRMZM2G134073_P013e-19(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.18e-14NAC domain containing protein 84