PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028609.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 108aa    MW: 11883.6 Da    PI: 11.4054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028609.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.6e-113982350
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50
                y+GVr ++   +W+AeI  p++   r+  +lg+f+taeeAa a+  ar
  Do028609.1 39 YRGVRERH-CVKWEAEIELPCN---RTPLWLGSFDTAEEAALAYTTAR 82
                9***9555.899*******965...4*****************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-123882IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-173882IPR001471AP2/ERF domain
SMARTSM003803.8E-1038103IPR001471AP2/ERF domain
PROSITE profilePS5103213.5253881IPR001471AP2/ERF domain
CDDcd000182.33E-163981No hitNo description
PfamPF008472.5E-53982IPR001471AP2/ERF domain
PRINTSPR003676.2E-73950IPR001471AP2/ERF domain
PRINTSPR003676.2E-76177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MQFIQAQLHL QRNAGLGPRA TPMKSAGPVP PAVAPQQLYR GVRERHCVKW EAEIELPCNR  60
TPLWLGSFDT AEEAALAYTT ARPTASAGRK RASTSPKMRR PGHRSTPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.11e-35ethylene-responsive transcription factor RAP2-13-like
SwissprotO656651e-19ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A1E5UU855e-73A0A1E5UU85_9POAL; Uncharacterized protein
STRINGSb07g020090.14e-32(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.15e-14ERF family protein