PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do028687.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 168aa MW: 19500.4 Da PI: 7.555

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do028687.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	104.4	1.6e-32	2	166	178	341
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 f+ +++++e++ +++++++p+E+l+Vn + + +l de v++ s +rd vL+ +++++P+v+++ +++++++ F +rf eal yys++fd+l+a+ Do028687.1 2 FHG-TTTKWETICVDDMNIEPDEVLIVNGITHFGNLTDEGVDIYSpsPRDVVLNNIRKMQPDVFILFVTNVSYSAPIFITRFREALFYYSSMFDMLDAT 99 777.7889*******************************9988779*********************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 + r++++r +Er l+++ + nvvac+g + + e +++W+ r ++aG+k++p + +++k ++ + Do028687.1 100 ARRDNHQRFLIERGLFRKCALNVVACKGLDGVDYPEIYKQWHVRNHRAGLKQLPSNRDVVKAVREKV 166 *****************************************************999999887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.548	1	168	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-30	2	166	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MFHGTTTKWE TICVDDMNIE PDEVLIVNGI THFGNLTDEG VDIYSPSPRD VVLNNIRKMQ 60 PDVFILFVTN VSYSAPIFIT RFREALFYYS SMFDMLDATA RRDNHQRFLI ERGLFRKCAL 120 NVVACKGLDG VDYPEIYKQW HVRNHRAGLK QLPSNRDVVK AVREKVKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do028687.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826966.1	4e-86	scarecrow-like protein 30
TrEMBL	A0A1E5UM70	1e-123	A0A1E5UM70_9POAL; Scarecrow-like protein 9
STRING	Pavir.Ha00318.1.p	6e-89	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5640	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	9e-45	GRAS family protein