PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028794.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 145aa    MW: 15561.5 Da    PI: 8.2531
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028794.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-053052123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C++ F ++  L  H++ H
  Do028794.1 30 FVCTYCDRKFYTSQALGGHQNAH 52
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-82271No hitNo description
PROSITE profilePS5015710.9493057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MERLEQELDL ELTLLHPGAL AAREEPPGFF VCTYCDRKFY TSQALGGHQN AHKYERNLAK  60
RRREIAAAMR LHGRSVAAPG ARVDPDGSPA GSAGVIDLLS AGAEPGRARM NIQKSVPSAG  120
QSGSLVHNIS SSSERAGELD LSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632829e-51EU963282.1 Zea mays clone 260368 hypothetical protein mRNA, complete cds.
GenBankEU9731309e-51EU973130.1 Zea mays clone 393764 zinc finger protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986958.15e-62zinc finger protein 1
TrEMBLA0A1E5UY591e-100A0A1E5UY59_9POAL; Uncharacterized protein
STRINGSi038885m2e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-17zinc finger protein 2