PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028847.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 123aa    MW: 13760.3 Da    PI: 8.8017
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028847.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.71.8e-132298261
        FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtg 61
                fYn+YAk+ GFs+r+ +s++s  ++e  k +fvC+kegk e++k++                 +e+  +  a+ + +
  Do028847.1 22 FYNAYAKRKGFSIRNGTSRRSAITDELDKVKFVCNKEGKGEKSKDHsneavelsgcengdttgSESDVQVAAVAKKK 98
                9***************************************9999886666666666555554444444444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-112282IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSSSDDPYVG KMFDTVQEAR VFYNAYAKRK GFSIRNGTSR RSAITDELDK VKFVCNKEGK  60
GEKSKDHSNE AVELSGCENG DTTGSESDVQ VAAVAKKKCT WVKGKRSREN EVYELQSKNT  120
YQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442929.23e-16protein FAR1-RELATED SEQUENCE 5
RefseqXP_021311908.13e-16protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1E5WKW73e-85A0A1E5WKW7_9POAL; Uncharacterized protein
STRINGPavir.J00335.1.p3e-20(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-13FAR1-related sequence 12