PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029043.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 183aa    MW: 20332.5 Da    PI: 7.8337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029043.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-16115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qky
       Do029043.1 115 PWTEEEHRLFLEGLEKYGRGDWRNISRQSVKTRTPTQVASHAQKY 159
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-42274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-62472IPR009057Homeodomain-like
SuperFamilySSF466892.58E-112478IPR009057Homeodomain-like
CDDcd001673.83E-42572No hitNo description
PROSITE profilePS500906.7952572IPR017877Myb-like domain
PROSITE profilePS5129421.14108164IPR017930Myb domain
SuperFamilySSF466893.09E-18110164IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17112163IPR006447Myb domain, plants
SMARTSM007171.6E-12112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12114158IPR009057Homeodomain-like
CDDcd001673.92E-11115160No hitNo description
PfamPF002491.2E-12115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAFYYGVSGQ SSSSAAAWGA PSSRPWTKAE DKVFEGALVL FPENVPNRWV LVASQLPGRT  60
AQEAWDHYQA LLADVDLIER GMVETPDSWD DDAAAGEERA GAGRGRGGER RRGVPWTEEE  120
HRLFLEGLEK YGRGDWRNIS RQSVKTRTPT QVASHAQKYF IRQASAASRS DGKRKSIHDI  180
TTP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9714051e-118EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961933.15e-94transcription factor DIVARICATA
SwissprotQ8S9H73e-52DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1E5UZ201e-131A0A1E5UZ20_9POAL; Transcription factor DIVARICATA
STRINGSi023363m2e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-46MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]