PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do029136.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 70aa MW: 7341.45 Da PI: 5.6494

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do029136.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	75.9	1.2e-23	1	57	24	79
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 ++a+c ++F+L +eLG+++d++ti+WLlqqa+pai ++tgt++++a+++ a+s + Do029136.1 1 MPALCVVQVFQLMRELGHKTDGETIDWLLQQAEPAIVAATGTGTIPANFSsLAVSLR 57 9**********************************************8885444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	18.074	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.1E-20	1	57	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MPALCVVQVF QLMRELGHKT DGETIDWLLQ QAEPAIVAAT GTGTIPANFS SLAVSLRFGA 60 LQPSSASRAA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do029136.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063432	2e-62	BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds.
GenBank	KJ726897	2e-62	KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978832.1	9e-35	transcription factor PCF3
Swissprot	Q53PH2	2e-30	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A1E5V2U4	2e-43	A0A1E5V2U4_9POAL; Transcription factor PCF3
STRING	Si026501m	1e-34	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-31	TCP family protein