PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029190.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 88aa    MW: 9512.89 Da    PI: 12.2967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029190.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19149355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                ++GVr+++ +grW+AeIr+p     r +r++ g+f taeeAa+a++aa ++++ 
  Do029190.1  1 FRGVRQRP-WGRWAAEIREPQ----RgRRVWPGTFNTAEEAAAAYVAACLRIHR 49
                79******.**********92....46*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.61E-13157No hitNo description
PRINTSPR003673.1E-10112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-25157IPR001471AP2/ERF domain
SMARTSM003803.0E-24163IPR001471AP2/ERF domain
PfamPF008479.3E-14148IPR001471AP2/ERF domain
PROSITE profilePS5103220.679157IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-19158IPR016177DNA-binding domain
PRINTSPR003673.1E-102339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
FRGVRQRPWG RWAAEIREPQ RGRRVWPGTF NTAEEAAAAY VAACLRIHRP GASTNLPPRP  60
SAGDTGPLPP PAASLLPPRP PPPPPAPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-17164670ATERF1
3gcc_A5e-17164670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023007232.11e-22pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046825e-20PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1E5WJI24e-52A0A1E5WJI2_9POAL; Uncharacterized protein (Fragment)
STRINGGorai.006G260300.13e-20(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.13e-17cytokinin response factor 1