PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029277.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 497aa    MW: 52787.2 Da    PI: 10.6566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029277.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.22.1e-3056145385
                 EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                 k+ tpsdv+k++rlv+pk+++e+h        g +++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++
  Do029277.1  56 KAVTPSDVGKLNRLVIPKQHVEKHfplqlpsAGGETKGVLLNFEDAKGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRS 145
                 889****************************5566899*************************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-3846171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2953145IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.35254163IPR003340B3 DNA binding domain
SMARTSM010192.2E-1954167IPR003340B3 DNA binding domain
PfamPF023623.6E-2756145IPR003340B3 DNA binding domain
CDDcd100175.80E-2856158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MLRKHTYFDE LAQNKRAFAA AITAPTTSAL ASAHSSSLSS PSPAAAAAAR EHLVDKAVTP  60
SDVGKLNRLV IPKQHVEKHF PLQLPSAGGE TKGVLLNFED AKGKVWRFRY SYWNSSQSYV  120
LTKGWSRFVK EKGLQAGDVV GFYRSAPAAG ADSKLFISCK LRPIPTSPAS PVEPSPAPVA  180
KAVRLFGVDL LTAPATAAVP AEAMAGSDPA ARRQSSSRRR RSSPPGLTSM ASAARPWPPP  240
PGASTARPRF PGSPPALPSM ASLEQQLPAP APFATPVPPR LPPSPRARGL RRDSSCRRAP  300
GASAAGAFRG SAKLPQRPTQ TPIHGVAGAA AADATAVRRA GPRSPDLPLQ RRGHAAWRAA  360
CRSIGLVIVF DGVLRKPKMS WTPKDGLVCA IRAMQDHAAE LRKLVHEHFT TAEAVDGHYV  420
NSLLLQLEEL ADELDKVSFT CLEVVPPPSA NNVGPSITSE EEELAAELDR VPSPEHRTIQ  480
NLFAEMGTTT SPGGFNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-49481632114B3 domain-containing transcription factor NGA1
5os9_B6e-49481632114B3 domain-containing transcription factor NGA1
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UNY80.0A0A1E5UNY8_9POAL; AP2/ERF and B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.26e-52related to ABI3/VP1 2