PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029300.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 123aa    MW: 13638.8 Da    PI: 9.806
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029300.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.9e-12831171145
                 HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  11 vtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                   f kRr g++ KA EL  LC+a  a i+fs++gk
  Do029300.1  83 MCFFKRRSGLFSKATELAALCGAHNAFIMFSPSGK 117
                 5799******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-1565121IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.20865123IPR002100Transcription factor, MADS-box
SMARTSM004328.6E-1065121IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-106787IPR002100Transcription factor, MADS-box
PfamPF003197.9E-1775120IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-1087102IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-10102123IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MAARTVLYSL CFSAPGFTVP RLEVPEAPGK VNAGNDRNAA ALRRRSHCWN KPDLVAVQSE  60
EENVLGRQKI EVRPVERPDA LHMCFFKRRS GLFSKATELA ALCGAHNAFI MFSPSGKPYS  120
VFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029300.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813008.11e-17MADS-box protein AGL71-like
TrEMBLA0A1E5W6263e-86A0A1E5W626_9POAL; Uncharacterized protein
STRINGPavir.Da00904.1.p9e-19(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-14AGAMOUS-like 28