PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029306.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 450aa    MW: 47981.1 Da    PI: 8.7556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029306.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-055373323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C++Cgk F r  nL+ H r H
  Do029306.1 53 CEICGKGFQRDQNLQLHRRGH 73
                *******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.93E-75073No hitNo description
Gene3DG3DSA:3.30.160.603.8E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0765173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4895173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM0035514094124IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.93E-7124149No hitNo description
SMARTSM00355160129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSNLTSGGPN APPPPPSASG NKRKRSLPGN PDPDAEVVAL SPATLMATNR FLCEICGKGF  60
QRDQNLQLHR RGHNLPWKLK QRGTGKEAQR RKVYVCPEAS CVHHDPVRAL GDLTGIKKHF  120
FRKHGEKKWK CDKCSKKYAV HSDWKAHSKI CGTREYKCDC GTIFSRRDSF ITHRAFCDAL  180
TEESAKAIGL NAMAAAPAHR HPLVFSPPPP PQVMQHQVQD LASLQEHHHQ EAMQPPQAQQ  240
QQYCNYAMKT EMPPWPPMTY DHHAPHPLLQ PVCGAAAQSS ATSAPPLQLP AASAHLSATA  300
LLQKAAQMGA TIGGAGAAGA GAHYTQMAGP ATSAPGSATF GLGLPGLNAQ QQADGVMGGL  360
ARTASHGRSG EDGGGGGGDG MTRDFLGLRA LSHRDILGLA GFDSSCMGAV TATANMSCYE  420
QPQQHEQAQA QAQAQQQNSN EPWHGMGSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34125191369Zinc finger protein JACKDAW
5b3h_F5e-34125191369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569260.0EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-114IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1E5VAW90.0A0A1E5VAW9_9POAL; Protein indeterminate-domain 9
STRINGSi001287m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.14e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]