PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029351.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SRS
Protein Properties Length: 224aa    MW: 23421.4 Da    PI: 10.5261
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029351.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702109.64.9e-34421934154
      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvks.tWvpaakrrer.qqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaesk 97 
                 g ++C+dC  +ak dCah+ C  CC  rgf C  hvks    pa + +er qq+la+++++a++ a    + + kr+r l+s ++ +++s+++ + +++
  Do029351.1  42 GITRCRDCWLRAKADCAHRCCSNCCSGRGFVCPAHVKSsSHAPAPQCSERsQQMLASLAASASTPAavaPTRKRKRPRALHSVATPTTTSSSVGQPTAT 140
                 5579*********************************73589********4445555544444433222233333333333333333333333333332 PP

      DUF702  98 keletsslPeevsseav.frcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   +  + l +evs +av fr+vr++      +e+aY+t+v+igGhvf+GiLyd G+++
  Do029351.1 141 -ATVPEMLAREVSLDAVlFRRVRLGP----GAEVAYHTSVTIGGHVFRGILYDVGPHS 193
                 .333344999***999769*****97....689**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.8E-3844192IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.9E-11150191IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPPFDAASSH SAEEGFELRR RRRLVHGAAS SSPPPRSSRG GGITRCRDCW LRAKADCAHR  60
CCSNCCSGRG FVCPAHVKSS SHAPAPQCSE RSQQMLASLA ASASTPAAVA PTRKRKRPRA  120
LHSVATPTTT SSSVGQPTAT ATVPEMLARE VSLDAVLFRR VRLGPGAEVA YHTSVTIGGH  180
VFRGILYDVG PHSRSMASTD TGGSSDGSSQ STAGGGLLDL TLRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723LRRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029351.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801651.12e-54protein SHORT INTERNODES-like
TrEMBLA0A1E5V6T81e-158A0A1E5V6T8_9POAL; Uncharacterized protein
STRINGSi032132m4e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2105377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-19Lateral root primordium (LRP) protein-related