PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029461.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 170aa    MW: 17892.3 Da    PI: 9.4009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029461.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-052951123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  Do029461.1 29 YPCSFCKREFRSAQALGGHMNVH 51
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-62655No hitNo description
SMARTSM003550.0072951IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-72952IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0942956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MERESKQQPW SYSSCGGFMA SFTWPPRSYP CSFCKREFRS AQALGGHMNV HRRDRARLRH  60
GGSPPLPLPL PLPAPAAAGH HGAAASPCRP RAPAPAVMIP NLNYPPPPPP SSSKKHDKRP  120
EVSLELGFGV VCSFSGPSAA AATATPTPGG SPPPEDDGGL DLELRLGVSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-132451229superman protein
2l1o_A2e-132451229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804370.13e-44transcriptional regulator SUPERMAN-like
TrEMBLA0A1E5UI841e-117A0A1E5UI84_9POAL; Uncharacterized protein
STRINGSi019050m7e-39(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-23C2H2 family protein