PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029500.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 277aa    MW: 29719.2 Da    PI: 6.1376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029500.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17e-2194143255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Do029500.1  94 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 143
                 59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.60E-3093153No hitNo description
Gene3DG3DSA:3.30.730.108.1E-3394153IPR001471AP2/ERF domain
PROSITE profilePS5103223.35494151IPR001471AP2/ERF domain
SMARTSM003801.5E-3594157IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2394153IPR016177DNA-binding domain
PfamPF008476.6E-1595143IPR001471AP2/ERF domain
PRINTSPR003672.3E-1195106IPR001471AP2/ERF domain
PRINTSPR003672.3E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRAVESFMQE DAPSPLVMQP PAPAPTLPPF PAGAHGLSYP PPPATHLSPA QMQFIQAQLH  60
LQRNPGLGPR AQPXKPGVPV PPASASAQQR PQKLYRGVRQ RHWGKWVAEI RLPRNRTRLW  120
LGTFDTAEEA ALAYDQAAYR LRGDAARLNF PDNAASRAPL DPTVDAKLQA ICATIAAASS  180
AKGGKAKRRA TPINAPVVEV EAEAYPSNSS SDEASGSGSD DEMSSASPLA LPAPAPPLAE  240
TGMGQLDFSE VPWDEAESFV LRKYPSYEID WDALLSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2093151463ATERF1
3gcc_A4e-2093151463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.11e-143ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A1E5WHM80.0A0A1E5WHM8_9POAL; Uncharacterized protein
STRINGPavir.Fa01600.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-31ERF family protein