PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029729.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 465aa    MW: 52881 Da    PI: 6.9713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029729.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-128683296
                --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 s t++le+++g  +++++    + +++vl+ GW+ Fv+a++++e+Df++F+++++s+fe +  +
  Do029729.1  8 LSGTIKLESPHGSLYDIEV--AERFNKVVLRHGWEAFVDAHDIEENDFLLFRHTEKSCFEIL--I 68
                4569***************..99999**************************9998999544..4 PP
2B346.56.8e-15199295499
                 E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                 ++ +s+v    + lv+pk++a +h   +++   +tl+   ++++W  k+  rk  + y+l++ W +Fv++n++k+gD++++  ++  ++f+++v+++r+
  Do029729.1 199 IMRKSHVQGPsAFLVIPKEYAFAHFPHETT--NITLRMpGKSKKWHPKFHRRKDLRVYMLRGQWLDFVRDNHVKVGDICLLFPTKGaRKFTFTVHLLRT 295
                 55556655433789*******999755455..5666663577*******77777777**********************98877555*******99987 PP
3B351.71.6e-163854601997
                 -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
          B3  19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                 + ++a+ + ++    ++ ++ +  g+sWe ++ +r ++++ +l +GW+eFv +ngL++gD ++F+l+++ s+ +++v+++
  Do029729.1 385 SSRYATGN-LPD--RRQTMVLHYMGKSWETQIVIRSGRRW-FLCGGWSEFVCDNGLRVGDLCLFELEKNeSKLTMTVHII 460
                 44444444.222..2346677889********76666666.5677**********************9999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.716172IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-15274IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-13270No hitNo description
PfamPF023622.1E-10367IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-14374IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.2472IPR003340B3 DNA binding domain
SuperFamilySSF1019364.58E-20190295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19190294IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-13196295IPR003340B3 DNA binding domain
SMARTSM010194.4E-7196296IPR003340B3 DNA binding domain
CDDcd100171.99E-20196291No hitNo description
PROSITE profilePS5086312.915197296IPR003340B3 DNA binding domain
CDDcd100171.26E-14366458No hitNo description
SuperFamilySSF1019364.12E-17366460IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.351367463IPR003340B3 DNA binding domain
SMARTSM010192.6E-9367463IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-18367460IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-14384461IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
LKHFAGKLSG TIKLESPHGS LYDIEVAERF NKVVLRHGWE AFVDAHDIEE NDFLLFRHTE  60
KSCFEILILD SDGCEKVFPC TGIENIPCFK ERSVDSVDIS SSSHHETTES SESESFTRCA  120
KGSSCHCRKS VKMAATSSSS EESGDIPSES ESFELDDLQA PLGADYILPH RSYLSEAQEE  180
RVVALIRETQ HKVTAFVAIM RKSHVQGPSA FLVIPKEYAF AHFPHETTNI TLRMPGKSKK  240
WHPKFHRRKD LRVYMLRGQW LDFVRDNHVK VGDICLLFPT KGARKFTFTV HLLRTTAARS  300
MIGTGFRSVS SCRGTSSPKM ASVVHIKEEP TDEEYVSSES DIHGISNKYL ENEDPGGSFE  360
PPYIMSFKSF LSQSQKKIVE EKEISSRYAT GNLPDRRQTM VLHYMGKSWE TQIVIRSGRR  420
WFLCGGWSEF VCDNGLRVGD LCLFELEKNE SKLTMTVHII FREQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982415.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV211e-149Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A1E5UYU70.0A0A1E5UYU7_9POAL; B3 domain-containing protein (Fragment)
STRINGSi035046m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-11B3 family protein