PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029831.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 171aa    MW: 19453.3 Da    PI: 9.0577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029831.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-134891755
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                ++Er RR+r+N+++  Lr+ +P+      +K++Ka+i + ++ YI +Lq
  Do029831.1 48 AMERDRRRRLNQRLYALRSFVPNI-----TKMDKASIIRDTIAYIEHLQ 91
                79*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0534190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1647105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-154796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-114891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1448105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-95795No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEAEIEHGGV GLDLYWQSPP RFLLQPLDFA FIDTVAVATS PPPPRTVAME RDRRRRLNQR  60
LYALRSFVPN ITKMDKASII RDTIAYIEHL QEQERRFLVD ISALQSTDTT GTIKTEDAAL  120
GQAMDDADRY PRWKKMRKVT SDRVTCSVAS SPPPLQILEV PTRSNLKVAE K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15360RRRLNQRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029831.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975231.19e-45transcription factor bHLH35 isoform X2
SwissprotQ2HIV92e-21BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1E5WFU71e-122A0A1E5WFU7_9POAL; Uncharacterized protein
STRINGSi010685m3e-44(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.42e-12bHLH family protein