PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029846.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 260aa    MW: 28032.9 Da    PI: 7.4275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029846.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-1196141454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RRd +N +f eLr  +P        +++Ka+ L  A  YI +L
  Do029846.1  96 THVEAERQRRDILNRRFCELRAAVPIV-----SRMDKASLLSDAATYIAQL 141
                 799***********************6.....49***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
SuperFamilySSF474591.83E-1590156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.192141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.09E-1195146No hitNo description
PfamPF000108.0E-996141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1496156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-1098147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDELVRPASS GSSPSPASFF STACQHQGLQ FVSCDDLQRW LGDDNWLDAE PSDGVTRGDE  60
GSRLPGIDDL CGEPPAPALR RRGRKPGPRS DGPALTHVEA ERQRRDILNR RFCELRAAVP  120
IVSRMDKASL LSDAATYIAQ LRDRVKQLEA ETKRAATSAA AAAVAPMAAT YSLGVQEKLE  180
VRMVGREAAA LLLTTTPSQR HAPARFMLAL RSLNLPVQHA CVCLVGGMTV QDAVVDVPAA  240
LRDERGLHAA LLYMLQQTAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1695151763Transcription factor MYC2
5gnj_B4e-1695151763Transcription factor MYC2
5gnj_E4e-1695151763Transcription factor MYC2
5gnj_F4e-1695151763Transcription factor MYC2
5gnj_G4e-1695151763Transcription factor MYC2
5gnj_I4e-1695151763Transcription factor MYC2
5gnj_M4e-1695151763Transcription factor MYC2
5gnj_N4e-1695151763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029846.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822542.18e-99transcription factor MYC3-like
TrEMBLA0A1E5W6220.0A0A1E5W622_9POAL; Uncharacterized protein
STRINGPavir.Fa00117.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.17e-29bHLH family protein