PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do030064.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 132aa    MW: 15026.2 Da    PI: 5.1641
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do030064.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.23.7e-322125101222
        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 +I +a++g ++vHi+D++  +G+QWp+Ll ++a+   ++pp+++iT+++ p++      ++e+tg+rL++fA+++gvpf+f+  ++ ++e++ +++L++
  Do030064.1   2 TIFKATAGRKKVHIVDYSDHYGFQWPTLLGSFATHWeGEPPEVKITVISLPQPWfcPGAQIEQTGRRLSNFARRCGVPFKFRS-IVAKWETICVDDLDI 99 
                 6999*****************************88757799***********9999***************************.6999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsles 222
                 +p+E l+Vn+ ++  +l+de  +++s
  Do030064.1 100 EPDELLIVNSLFHFGKLMDEGDDIDS 125
                 ******************99888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.9271132IPR005202Transcription factor GRAS
PfamPF035141.3E-292125IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MTIFKATAGR KKVHIVDYSD HYGFQWPTLL GSFATHWEGE PPEVKITVIS LPQPWFCPGA  60
QIEQTGRRLS NFARRCGVPF KFRSIVAKWE TICVDDLDIE PDELLIVNSL FHFGKLMDEG  120
DDIDSQALGI WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-172130100228GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo030064.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450068.29e-57scarecrow-like protein 14
TrEMBLA0A1E5WM256e-94A0A1E5WM25_9POAL; Uncharacterized protein
STRINGSb05g027783.13e-56(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-26SCARECROW-like 14