PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do030125.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 107aa MW: 12087.9 Da PI: 9.3665

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do030125.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	103.1	2.5e-32	1	94	8	101
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 lrr+Ca+dCvla yfp +qp+++a vh +FG+sn++++l++lp +er +a+++++ eA++r++dPvyG++gvi +lqq+++ +++ela+++++l Do030125.1 1 LRRRCAPDCVLALYFPPSQPRRYADVHAVFGTSNITRVLQSLPVQERGRAADTMATEAHWRMQDPVYGCTGVIDRLQQEIHAVQHELAKTRAQL 94 69***************************************************************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.26	1	94	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-32	1	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
LRRRCAPDCV LALYFPPSQP RRYADVHAVF GTSNITRVLQ SLPVQERGRA ADTMATEAHW 60 RMQDPVYGCT GVIDRLQQEI HAVQHELAKT RAQLAVHVQG TVLLQRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-31	1	102	18	119	LOB family transfactor Ramosa2.1
5ly0_B	8e-31	1	102	18	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do030125.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683529.1	4e-58	LOB domain-containing protein 24
TrEMBL	A0A1E5W8H4	5e-73	A0A1E5W8H4_9POAL; LOB domain-containing protein 24 (Fragment)
STRING	Si015521m	4e-57	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-34	LOB domain-containing protein 24