PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0006s00029.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family ARR-B
Protein Properties Length: 365aa    MW: 41205.9 Da    PI: 6.9059
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0006s00029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.16.1e-26296349155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr+ W+ e+H++Fv+av+ L G +kA+P++il+lm++ gLt+e+v+SHLQkYRl
  Dusal.0006s00029.1.p 296 KPRVIWSVEMHQQFVNAVNIL-GVDKAVPRKILDLMDIGGLTRENVASHLQKYRL 349
                           79*******************.********************************8 PP
2Response_reg722.3e-24310210109
                           HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
          Response_reg  10 vrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                           v+++l+q+l+  +y +v+++++g++a+++l+ +   +Dl+l+D++mp+mdG++ll+ i   e++lp+i+++++g+ e++l+ +  Ga d
  Dusal.0006s00029.1.p   3 VLRVLEQMLRLCQY-SVTSCTSGTSAVAQLRSQPdnFDLVLCDVMMPDMDGFKLLE-IVGLEMDLPVIMISGNGDTETVLRGVTHGAVD 89 
                           67899*********.***************777777*******************7.5556679************************* PP

                           EEESS--HHHHHH CS
          Response_reg  97 flsKpfdpeelvk 109
                           fl Kp+ +eel++
  Dusal.0006s00029.1.p  90 FLIKPVRIEELRN 102
                           ***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011037.7371108IPR001789Signal transduction response regulator, receiver domain
SMARTSM004486.2E-221104IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-213102IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.7E-313112IPR011006CheY-like superfamily
CDDcd001568.47E-263108No hitNo description
Gene3DG3DSA:3.40.50.23007.7E-333115No hitNo description
Gene3DG3DSA:1.10.10.605.6E-27293353IPR009057Homeodomain-like
SuperFamilySSF466897.17E-19293353IPR009057Homeodomain-like
PROSITE profilePS512949.624293352IPR017930Myb domain
TIGRFAMsTIGR015571.1E-21296349IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MQVLRVLEQM LRLCQYSVTS CTSGTSAVAQ LRSQPDNFDL VLCDVMMPDM DGFKLLEIVG  60
LEMDLPVIMI SGNGDTETVL RGVTHGAVDF LIKPVRIEEL RNVWQHVMRR RLEGEPFGLD  120
TSDNDLSMDD QEEAPPPVGQ PPLSPEPLAI PLDVCSLPMP QPQLPPQVPA YPPPPPMTQT  180
LHQPLQPMQQ HQPQQHQQQQ QQLLLQQQHR AQHLQQQHLQ QQHLQQQHQQ QHPQQRQHQQ  240
HIQDHHQLPI APPPPSLQLT KKPSSSSSSK AAKSSKSGQK KRKESEAGEE GSTSKKPRVI  300
WSVEMHQQFV NAVNILGVDK AVPRKILDLM DIGGLTRENV ASHLQKYRLY LKKVDANPDE  360
QFTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-19292354163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005652114.13e-47CheY-like protein
SwissprotQ5SML52e-44ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A2J8A7S02e-46A0A2J8A7S0_9CHLO; Two-component response regulator ARR1
STRINGXP_005652114.11e-46(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-42response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]