PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0015s00002.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family MYB
Protein Properties Length: 504aa    MW: 54670.4 Da    PI: 5.7698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0015s00002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-17112157147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +g+WT eEde lv++v ++G ++W+  ++++  gR++k+c++rw++ 
  Dusal.0015s00002.1.p 112 KGPWTHEEDEHLVRLVDKFGARNWSGMSKHIK-GRSGKSCRLRWLNQ 157
                           79*****************************9.***********996 PP
2Myb_DNA-binding56.27.9e-18164208147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +g++T+eEd  ++ ++k +G++ W+tIa+ ++ gRt++ +k++w++ 
  Dusal.0015s00002.1.p 164 KGPFTAEEDRSIIALHKIHGNK-WATIAKNLP-GRTDNAVKNHWNST 208
                           79********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.468107158IPR017930Myb domain
SMARTSM007173.6E-14111160IPR001005SANT/Myb domain
SuperFamilySSF466891.91E-30111205IPR009057Homeodomain-like
PfamPF002492.7E-16112157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-25113165IPR009057Homeodomain-like
CDDcd001671.20E-12114156No hitNo description
PROSITE profilePS5129428.242159213IPR017930Myb domain
SMARTSM007173.5E-17163211IPR001005SANT/Myb domain
PfamPF002492.8E-15164208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-25166212IPR009057Homeodomain-like
CDDcd001679.53E-13166209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDGFNIDTWL ASNAFAGQAV QPVAPQPAVD PQLFAQLFAN MGQQGVMGDD MGGALQQHTQ  60
HEQSRATPNY DSDEVELEDD EELGGSGGSG RGRGGRRGGG GGGGGGGEDS NKGPWTHEED  120
EHLVRLVDKF GARNWSGMSK HIKGRSGKSC RLRWLNQLNP NVKKGPFTAE EDRSIIALHK  180
IHGNKWATIA KNLPGRTDNA VKNHWNSTLR RRENEDVGPF VPLAGASLED ESRGGMDDVL  240
KSLMQQSSTG HANPNIMAAY DPNANAGYMQ PKDEEDTEDD GQGHKRRRYN GPDAIDPADS  300
PLRSLINSAV REVLAREMPL ILQMFSRTLK QSLAAQPRME LPGLLAALDT YINTAVAHRT  360
EQHLGTSQPG SQPQQQQQQQ QLALPAPLAA AAGAPPAGGV SSPQDLMQLL QQHLPPSEDA  420
LNPDFTSLLF GVALQQQQQQ QQQHLQQPQG LQQAVHGHEQ HQPQQQQHHD AVQAVAAMLG  480
GGQQQQQQLQ LLQQELKQEP QAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-411062121107B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101GGRRGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-44myb domain protein 1