PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0179s00020.2.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family MYB
Protein Properties Length: 245aa    MW: 27998.1 Da    PI: 9.7243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0179s00020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-1760104247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           g W ++E e+l+++v+++G + W+ +a+++g +Rt+kqc++rwq++
  Dusal.0179s00020.2.p  60 GYWKEDEKERLLEGVELHGLDKWSEVASYVG-TRTAKQCRERWQNV 104
                           57*****************************.************96 PP
2Myb_DNA-binding23.51.3e-07111160147
                           TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                           rgr+T+ E e l++a k    +     W + a+ m+ +Rt+ q++  wq++
  Dusal.0179s00020.2.p 111 RGRFTPAEVEALKNAAKTVMQEegrlVWGKMAKLMP-RRTDDQIRRAWQQL 160
                           89**************999999999***********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.158153IPR017930Myb domain
SuperFamilySSF466894.81E-7249IPR009057Homeodomain-like
SMARTSM007170.0081453IPR001005SANT/Myb domain
PfamPF002494.6E-6748IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-8850IPR009057Homeodomain-like
PROSITE profilePS5129420.34754109IPR017930Myb domain
SuperFamilySSF466893.24E-1958157IPR009057Homeodomain-like
SMARTSM007176.7E-1558107IPR001005SANT/Myb domain
PfamPF002491.2E-1660104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-1961111IPR009057Homeodomain-like
CDDcd001672.85E-1362105No hitNo description
PROSITE profilePS500906.737106161IPR017877Myb-like domain
SMARTSM007170.0079110163IPR001005SANT/Myb domain
PfamPF002492.1E-5111160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-11112160IPR009057Homeodomain-like
CDDcd001671.52E-4113160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKHKNTVWSP EDSKKLEALV ARKGRNWQAI SLEFHGKYDR HQIRDRWHGQ AEMQMFRHLG  60
YWKEDEKERL LEGVELHGLD KWSEVASYVG TRTAKQCRER WQNVISKEVN RGRFTPAEVE  120
ALKNAAKTVM QEEGRLVWGK MAKLMPRRTD DQIRRAWQQL QTHGKLHHLV HPLHCHLHHC  180
SSPAPLLLTS TTAPHHHFSP APLLLTTCST ATCTTCASAP PVSLAPACAS YALLLFCQKS  240
HTLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-1661577151MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-1661577151MYB PROTO-ONCOGENE PROTEIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.26e-20myb domain protein 3r-3