PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dusal.0253s00015.1.p

Organism

Dunaliella salina

Taxonomic ID

3046

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella

Family

C3H

Protein Properties

Length: 1395aa MW: 152425 Da PI: 8.3357

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dusal.0253s00015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.3e-08	511	534	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +++elCr +a G Ck+G C+FaH Dusal.0253s00015.1.p 511 PFRELCRSWAS-GGCKRGLDCPFAH 534 579******.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.164	510	537	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.003	511	536	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-6	512	534	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.1E-5	514	534	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1395 aa Download sequence Send to blast
MSSGATPTAS LELGPELLAL LYQPQSAVRL LSMLQQQLDG WTRSSCSQPF KQLLAGTMVL 60 VQTTNSSQLR LRCIEAAYFR DQTCWLRLWG GGEASVHQLC ETALTKITDL EPTLCECARW 120 WHAQSLPLFT LSVVRETVRT TWVGLMVWYL AAQQTSLPPD WVARMFKEQL SKPLPQQVLD 180 GLHSLPPFDH SRFQLAVAKG AKAAALALPP PPQPPPQLPQ PQPQPRPLLL RLQPPPPPPP 240 PPPPPSATQA TAAAVATAAA AVEAQAAAAG AAAACHLRIP APAMPLQLPT TATPQAPNGA 300 VKPSAPPLVP PLSIPSNPAL VKIKKPRGTG SCQQQDKLQG QLAAAGQSQP EQQEQQEQQE 360 QQQPAGGAGE VKGGRRHSQV SAKAGDCRET EMATVGGTSS GQAEGEQEGQ QGKGQPQHQE 420 EQRELQDKLV DLRAGPAARS VKLLDEPPCV PTTDLVKLQA SAFPSAVTTP VLPTAELAPP 480 SQPLPAPPAR VAAQPQPCPQ KEAQPGHKSA PFRELCRSWA SGGCKRGLDC PFAHLGKTGT 540 NKKKEEKRTE SPSKQRRRAT ERATPPWWFL KPEDCPSGSR NQSGHASKSR SKCDSDTSSS 600 PSRAPGRRSR SKSHYRRRSR SHSRHSCRRR RRHSSSSNSS NNSSSSSDRR GTVSSGGRSR 660 HHRSKGRRGK VREGSSCKQS RGHSRSRERS RGWRRRSRSR ERGTDTGIRE RNGEGGRSCL 720 GDGMNAMTYE QRQQEREKVS KAAAAAARSG EGMPGVTYEL RQQDHAAKRD RAQMEQPEPP 780 RGPLAWGQWG WEKREAQIMS SHQHDVQQLQ QLQQADVSLL FPPPRSSESG YTGAADQLGC 840 AAPVAMPFSS GPQHLVRSAS TAFAAPASNV ASSSAPPTPC LHTQSSISQA KQSMLQQQQG 900 QQQQQLQQGQ QQQQPQQGQQ QQQQQQQQQQ QQQQQQQQQQ QGQQQQQQQQ QQQQQQQHQQ 960 KQQGQQKQQE QQEQQQQQQE QHERQKQQQH QEQHHPGLQD GGHGSQHCST PAPHAQQALA 1020 EPDMSEGQVL GRQTGSITLV EKACDCPELR SASCHLQPCG AGYVHLVCSL QEVDLQQGVP 1080 GSPTAWQPLH VVQSSSDPNV GKAISSPGSQ PPEGRFGAPA AAEPAGTASV ASGTVIKQEE 1140 EEDQMPLAGD LQDQICNQMQ QPEQQGHLLM VGQDGQLDQG QWEEQYQLTE REQQQQQQQQ 1200 QQQQQQDQDQ EQIQQQGPAG HEQRRKQQQE QEQEQEQEQE PEDLDGIPLM ERARLLGLAA 1260 QKKQAAGCPA GLRCPTCFLP QDDCLGCRPA QDLQVLQGQT DEGFSPTKQQ VVGATVNRAA 1320 RDATDLSIFK LQLAAVQRYL DECLEEQRRI STAQQALGER ARIAAAEHEA AHAAYKAALQ 1380 ALLGGVQDSD QAMT*

Sequence ? help Back to Top

Protein Sequence Length: 1395 aa Download sequence Send to blast

MSSGATPTAS LELGPELLAL LYQPQSAVRL LSMLQQQLDG WTRSSCSQPF KQLLAGTMVL  60
VQTTNSSQLR LRCIEAAYFR DQTCWLRLWG GGEASVHQLC ETALTKITDL EPTLCECARW  120
WHAQSLPLFT LSVVRETVRT TWVGLMVWYL AAQQTSLPPD WVARMFKEQL SKPLPQQVLD  180
GLHSLPPFDH SRFQLAVAKG AKAAALALPP PPQPPPQLPQ PQPQPRPLLL RLQPPPPPPP  240
PPPPPSATQA TAAAVATAAA AVEAQAAAAG AAAACHLRIP APAMPLQLPT TATPQAPNGA  300
VKPSAPPLVP PLSIPSNPAL VKIKKPRGTG SCQQQDKLQG QLAAAGQSQP EQQEQQEQQE  360
QQQPAGGAGE VKGGRRHSQV SAKAGDCRET EMATVGGTSS GQAEGEQEGQ QGKGQPQHQE  420
EQRELQDKLV DLRAGPAARS VKLLDEPPCV PTTDLVKLQA SAFPSAVTTP VLPTAELAPP  480
SQPLPAPPAR VAAQPQPCPQ KEAQPGHKSA PFRELCRSWA SGGCKRGLDC PFAHLGKTGT  540
NKKKEEKRTE SPSKQRRRAT ERATPPWWFL KPEDCPSGSR NQSGHASKSR SKCDSDTSSS  600
PSRAPGRRSR SKSHYRRRSR SHSRHSCRRR RRHSSSSNSS NNSSSSSDRR GTVSSGGRSR  660
HHRSKGRRGK VREGSSCKQS RGHSRSRERS RGWRRRSRSR ERGTDTGIRE RNGEGGRSCL  720
GDGMNAMTYE QRQQEREKVS KAAAAAARSG EGMPGVTYEL RQQDHAAKRD RAQMEQPEPP  780
RGPLAWGQWG WEKREAQIMS SHQHDVQQLQ QLQQADVSLL FPPPRSSESG YTGAADQLGC  840
AAPVAMPFSS GPQHLVRSAS TAFAAPASNV ASSSAPPTPC LHTQSSISQA KQSMLQQQQG  900
QQQQQLQQGQ QQQQPQQGQQ QQQQQQQQQQ QQQQQQQQQQ QGQQQQQQQQ QQQQQQQHQQ  960
KQQGQQKQQE QQEQQQQQQE QHERQKQQQH QEQHHPGLQD GGHGSQHCST PAPHAQQALA  1020
EPDMSEGQVL GRQTGSITLV EKACDCPELR SASCHLQPCG AGYVHLVCSL QEVDLQQGVP  1080
GSPTAWQPLH VVQSSSDPNV GKAISSPGSQ PPEGRFGAPA AAEPAGTASV ASGTVIKQEE  1140
EEDQMPLAGD LQDQICNQMQ QPEQQGHLLM VGQDGQLDQG QWEEQYQLTE REQQQQQQQQ  1200
QQQQQQDQDQ EQIQQQGPAG HEQRRKQQQE QEQEQEQEQE PEDLDGIPLM ERARLLGLAA  1260
QKKQAAGCPA GLRCPTCFLP QDDCLGCRPA QDLQVLQGQT DEGFSPTKQQ VVGATVNRAA  1320
RDATDLSIFK LQLAAVQRYL DECLEEQRRI STAQQALGER ARIAAAEHEA AHAAYKAALQ  1380
ALLGGVQDSD QAMT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	615	631	RRRSRSHSRHSCRRRRR
2	617	630	RSRSHSRHSCRRRR
3	693	701	RRRSRSRER

Link Out ? help Back to Top
Phytozome	Dusal.0253s00015.1.p