PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0256s00006.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family Whirly
Protein Properties Length: 232aa    MW: 25075.4 Da    PI: 9.8585
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0256s00006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly86.72.9e-27562021135
                Whirly   1 svyktkaalkvkavrptfealdsgn....lklkraGglllelan.........ataerkydWekkqsfalsatevaelvdlaskescef 76 
                           svyk+k+a++++++ pt+e + s++    + +kr+G llle+an         + ++r+ydW++k + +l +te+a+l +l  +++   
  Dusal.0256s00006.1.p  56 SVYKGKGAMSMQPIVPTWEGVISQKgnaiQNVKRPGVLLLEFANvlgstgaqtSFGNRNYDWGNKLTISLNVTELAQLSELPVNGTMMV 144
                           79****************98766432223479***********94443333334578******************************** PP

                Whirly  77 fhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlr 135
                           +hdp +++ +e + +k l++ P p   G f+ +s++    +g++++svPv+  e+ vlr
  Dusal.0256s00006.1.p 145 YHDPDKNTPQENTRGKKLQISPTPQADGSFF-FSISGRGANGQQQVSVPVAPPEMKVLR 202
                           *********************9998887665.34445556**************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.8E-4144224IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.9E-2450223IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.8E-3057202IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MQQLMRSCGG LRSATSGISR PAATSVSLHS SHRRSLATHA AADSSYMPSR SYANYSVYKG  60
KGAMSMQPIV PTWEGVISQK GNAIQNVKRP GVLLLEFANV LGSTGAQTSF GNRNYDWGNK  120
LTISLNVTEL AQLSELPVNG TMMVYHDPDK NTPQENTRGK KLQISPTPQA DGSFFFSISG  180
RGANGQQQVS VPVAPPEMKV LRCSAEFLIP RLMGFDEMLF STSQQAQPME Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koo_A6e-24472305174Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_B6e-24472305174Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_C6e-24472305174Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_D6e-24472305174Single-stranded DNA-binding protein WHY1, chloroplastic
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.13e-24ssDNA-binding transcriptional regulator