PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0257s00027.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family Whirly
Protein Properties Length: 232aa    MW: 25126.5 Da    PI: 9.6713
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0257s00027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly872.3e-27572022135
                Whirly   2 vyktkaalkvkavrptfealdsgn....lklkraGglllelan.........ataerkydWekkqsfalsatevaelvdlaskesceff 77 
                           vyk+k+a+++++++pt+e + s++    + +kr+G llle+an         + ++r+ydW++k + +l +te+a+l +l  +++  ++
  Dusal.0257s00027.1.p  57 VYKGKGAMSMQPIAPTWEGVVSQKgnaiQNVKRPGVLLLEFANvlgstgaqtSFGNRNYDWGNKLTISLNVTELAQLSELPVNGTMMLY 145
                           9***************998876542233479***********94443333334578********************************* PP

                Whirly  78 hdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlr 135
                           hdp +++ +e + +k l++ P p   G f+ +s++    +g++++svPv+  e+ vlr
  Dusal.0257s00027.1.p 146 HDPDKNTPQENTRGKKLQISPTPQADGSFF-FSISGRGANGQQQVSVPVAPPEMKVLR 202
                           ********************9998887665.34445556**************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.105.3E-4144224IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.04E-2350223IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-3057202IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0009508Cellular Componentplastid chromosome
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MQQLMRSCVG LRSATSGISR PAATSVSLHS SHRRSLTTQA AADSSYMPSR SYANYCVYKG  60
KGAMSMQPIA PTWEGVVSQK GNAIQNVKRP GVLLLEFANV LGSTGAQTSF GNRNYDWGNK  120
LTISLNVTEL AQLSELPVNG TMMLYHDPDK NTPQENTRGK KLQISPTPQA DGSFFFSISG  180
RGANGQQQVS VPVAPPEMKV LRCSAEFLIP RLMGFDEMLF STSQQAQPME Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koo_A2e-24472305174Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_B2e-24472305174Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_C2e-24472305174Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_D2e-24472305174Single-stranded DNA-binding protein WHY1, chloroplastic
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.19e-25ssDNA-binding transcriptional regulator