PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0303s00005.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 563aa    MW: 59283.8 Da    PI: 7.5985
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0303s00005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.2e-09163188127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt++C+ + + G C++ ++Ck+aHg+
  Dusal.0303s00005.1.p 163 FKTRICNKWKE-GLCPFSETCKYAHGE 188
                           69*********.*************96 PP
2zf-CCCH37.25e-12220245126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC+ f+ t  CkyGd+C+FaHg
  Dusal.0303s00005.1.p 220 KKTRLCQEFMTTSMCKYGDKCTFAHG 245
                           59***********************8 PP
3zf-CCCH33.37.9e-11280304226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           kt+lC  f+ tG+C yGd C+FaHg
  Dusal.0303s00005.1.p 280 KTRLCEKFMTTGQCGYGDGCTFAHG 304
                           9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.03E-8161193IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5162188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295162189IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7163188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-13163194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-9218251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-14219252IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6219246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615219247IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8220245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-14275311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-8278309IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-7278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474278306IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8280304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MFPGWGMPQA GQTAMPQLPQ TAQTAQAANP WAQPQQAAAA PAAAPAATAS SLPLAAGLGS  60
MAGIGSMPMG SLPMAGSYGS SYGTAQQANP MASMMNPAMQ ALYQQYAMRW AAFQKLAAGG  120
GMGMNPMMGG MMGAMGGMMG DMSGAAGGAA GAGGPAAEGG IYFKTRICNK WKEGLCPFSE  180
TCKYAHGESD LRTVADNERA QQIGAGGQQV DKRGMINMMK KTRLCQEFMT TSMCKYGDKC  240
TFAHGHHELR APNPAGAAAT STGGMRSKTG QQGGNKDMRK TRLCEKFMTT GQCGYGDGCT  300
FAHGLHDMRR PDDPLPPSLL NRPNPSAAKA AAGGVTPITP LEQQQQQELQ QVYGAADVGG  360
VTDGGLTAVG GKRRLDETEL TTVDGTLKRQ HLEEESADGV QCHLCAELVK QGRSKVLNGI  420
NSLENPKAQQ LGVMILATSQ RLDQLWSKCS PAAVLGWMAK TPGLTIMDKI ELLRTIVFHA  480
HANQPNSRMP EGGLGLDSQK YVDKGLPPDC ADFVYVCMEG KEGAASMGEY FHMLEVCKQL  540
FGINDENYYQ VSTAVASIMM GM*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP551277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-14C3H family protein