PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Dusal.0303s00007.1.p

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella

Family

Protein Properties

Length: 206aa MW: 22384.3 Da PI: 5.2582

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dusal.0303s00007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	152.5	8e-48	6	113	2	101
NF-YC 2 lksfwekq.......iekatdf.knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 l+ f+ +q +++df knh+lPlarikki+k+dedv+misaeaPvl++kace+fileltl++w haeenkrrtl+++d++aa Dusal.0303s00007.1.p 6 LQEFFDDQlrevqqhSLDVADFtKNHQLPLARIKKIMKSDEDVRMISAEAPVLFAKACEIFILELTLKAWRHAEENKRRTLQRNDVSAA 94 566666664433222223456536*************************************************************** PP NF-YC 83 vtrtdifdflvdivprdel 101 ++rtdifdfl+d+vp+++l Dusal.0303s00007.1.p 95 IARTDIFDFLLDVVPKEDL 113 **************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.05E-30	14	104	IPR009072	Histone-fold
Pfam	PF00808	7.7E-23	32	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.9E-37	33	110	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSEHQLQEFF DDQLREVQQH SLDVADFTKN HQLPLARIKK IMKSDEDVRM ISAEAPVLFA 60 KACEIFILEL TLKAWRHAEE NKRRTLQRND VSAAIARTDI FDFLLDVVPK EDLTGAPEGG 120 QGAGSSHPMP QGAPQQTPMG PSVGQAGMPA LGPQGGGMLP AGMFPFPFSM PPGSEALLQE 180 GTLHRYTSHN QVPEPGTSSN PPDPH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-47	13	110	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	88	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022729999.1	2e-52	nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	6e-52	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A444XLM1	4e-52	A0A444XLM1_ARAHY; Uncharacterized protein
STRING	Lus10016750	8e-52	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2195	16	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-54	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Dusal.0303s00007.1.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]